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Staden package course

Espoo, Finland


25-26.3.2004


This EMBnet-funded course introduces the use of the Staden package. The morning lectures will cover a general introduction to the package and in the afternoon, the emphasis is on exercises. During the two days we will cover setting up of a new sequencing project, pre-processing data generated by automatic sequencing machines, creating of sequencing project databases, automatic assembly of batches of reads into contigs, checking and editing contigs. Checking will include examination of the traces for conflicting readings, searches for repeated sequences and analysis of the relative positions of readings derived from the same template. The course is open for participants from all the EMBnet member countries, and to the research community at all Finnish universities and institutes.

Keywords: embnet, molecular biology




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IndexStaden package course

15 hits   Page [1]
 
Using Staden 6
James Bonfield
Date: 2004-03-26    Language: en    Duration: 00:09:26
 
Using Staden 3
James Bonfield
Date: 2004-03-26    Language: en    Duration: 00:24:00
 
Using unix 2
James Bonfield
Date: 2004-03-26    Language: en    Duration: 00:04:05
 
First exercise
David Judge
Date: 2004-03-26    Language: en    Duration: 00:30:52
 
Overview of Gap4
James Bonfield
Date: 2004-03-26    Language: en    Duration: 00:44:10
 
Using Staden 8
David Judge
Date: 2004-03-26    Language: en    Duration: 00:23:38
 
Using Staden 1
James Bonfield
Date: 2004-03-26    Language: en    Duration: 00:15:20
 
Using unix 1
David Judge
Date: 2004-03-26    Language: en    Duration: 00:15:08
 
Using Staden 4
David Judge
Date: 2004-03-26    Language: en    Duration: 00:07:48
 
Introduction to the course
David Judge
Date: 2004-03-26    Language: en    Duration: 00:27:40
 
Using Staden 2
David Judge
Date: 2004-03-26    Language: en    Duration: 00:48:15
 
Second exercise
David Judge
Date: 2004-03-26    Language: en    Duration: 00:03:31
 
Using Staden 5
David Judge
Date: 2004-03-26    Language: en    Duration: 00:27:38
 
Using Staden 7
David Judge
Date: 2004-03-26    Language: en    Duration: 00:34:51
 
Third exercise
David Judge
Date: 2004-03-26    Language: en    Duration: 00:02:17
15 hits   Page [1]